Last updated on 2026-05-26 23:56:11 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.3 | 68.07 | 200.81 | 268.88 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.3 | 52.30 | 143.26 | 195.56 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.3 | 105.00 | 353.12 | 458.12 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.3 | 155.00 | 357.47 | 512.47 | OK | |
| r-devel-windows-x86_64 | 2.0.3 | 100.00 | 220.00 | 320.00 | OK | |
| r-patched-linux-x86_64 | 2.0.3 | 63.59 | 189.07 | 252.66 | OK | |
| r-release-linux-x86_64 | 2.0.3 | 121.85 | 192.38 | 314.23 | OK | |
| r-release-macos-arm64 | 2.0.3 | 16.00 | 70.00 | 86.00 | OK | |
| r-release-macos-x86_64 | 2.0.3 | 44.00 | 229.00 | 273.00 | OK | |
| r-release-windows-x86_64 | 2.0.3 | 98.00 | 222.00 | 320.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.3 | 13.00 | 64.00 | 77.00 | OK | |
| r-oldrel-macos-x86_64 | 2.0.3 | 44.00 | 183.00 | 227.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.3 | 110.00 | 295.00 | 405.00 | OK |
Version: 2.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(harmony)
Loading required package: Rcpp
• This is Harmony2 version 2.0.3
• Read the guide: run vignette()
• Get help: Visit the website at https://korsunskylab.github.io/harmony2/ and
report issues on https://github.com/immunogenomics/harmony/issues
>
> test_check("harmony")
241exists, retrying for cluster 6 3.23604
94exists, retrying for cluster 7 2.50148
241exists, retrying for cluster 25 3.45089
68exists, retrying for cluster 32 2.91882
93exists, retrying for cluster 33 2.6483
264exists, retrying for cluster 39 3.39297
294exists, retrying for cluster 40 3.2059
Saving _problems/test_two_variable-11.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_two_variable.R:5:1'): (code run outside of `test_that()`) ──────
<std::logic_error/C++Error/error/condition>
Error: inv(): use of LAPACK must be enabled
Backtrace:
▆
1. ├─harmony::RunHarmony(...) at test_two_variable.R:5:1
2. └─harmony:::RunHarmony.default(...)
3. ├─base::tryCatch(...)
4. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─harmony:::harmonize(harmonyObj, max.iter.harmony, verbose)
6. └─harmonyObj$moe_correct_ridge_cpp()
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang