# Joint Segmentation of Multivariate (Copy Number) Signals

## Documentation for package ‘jointseg’ version 1.0.3

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

binMissingValues | binMissingValues
doCBS | Run CBS segmentation
doDynamicProgramming | Run segmentation by dynamic programming
doGFLars | Group fused Lars segmentation
doPSCBS | Run Paired PSCBS segmentation
doPSCN | Run PSCN segmentation (defunct)
doRBS | Run RBS segmentation
estimateSd | Robust standard deviation estimator
Fpsn | Pruned dynamic programming algorithm
getCopyNumberDataByResampling | Generate a copy number profile by resampling
getTpFp | Calculate the number of true positives and false positives
jointSeg | Joint segmentation of multivariate signals
mapPositionsBack | mapPositionsBack
modelSelection | Model selection
plotSeg | Plot signal and breakpoints with segment-level signal estimates
pruneByDP | Exact segmentation of a multivariate signal using dynamic programming.
PSSeg | Parent-Specific copy number segmentation
randomProfile | Generate a random multi-dimensional profile with breakpoints and noise
retour_sn | Extract endpoint matrix from DP result
segmentByGFLars | Group fused Lars segmentation (low-level)
segmentByRBS | Recursive Binary Segmentation (low-level)