Assess Study Cohorts Using a Common Data Model
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Documentation for package ‘PhenotypeR’ version 0.5.0
Help Pages
| addCodelistAttribute | Adds the cohort_codelist attribute to a cohort |
| clinicalDescriptionSpecification | Clinical description specification |
| codelistDiagnostics | Run codelist-level diagnostics |
| cohortDiagnostics | Run cohort-level diagnostics |
| databaseDiagnostics | Database diagnostics |
| dataSourceDescriptionSpecification | Data source description specification |
| downloadClinicalDescriptionTemplate | Download a Clinical Description Template |
| downloadDatabaseDescriptionTemplate | Download a Clinical Description Template |
| draftClinicalDescription | Draft clinical descriptions using an LLM |
| getCohortExpectations | Get cohort expectations using an LLM |
| importClinicalDescription | Import clinical descriptions |
| importDatabaseDescription | Import database descriptions |
| phenotypeDiagnostics | Phenotype a cohort |
| populationDiagnostics | Population-level diagnostics |
| shinyClinicalDescriptions | Shiny app to create clinical descriptions for contextualising diagnostic results |
| shinyDataSourceDescriptions | Shiny app to create data source descriptions for contextualising diagnostic results |
| shinyDiagnostics | Create a shiny app summarising your phenotyping results |
| tableCohortExpectations | Create a table summarising cohort expectations |